mtmcgowan/GGcall: Clusters Infinium SNP chip data in polyploid species and calls genotypes

PolySNPclust calls genotypes from complex Infinium assay signals generated by polyploid species by: -Clustering samples for each marker using Gaussian mixture models -Removing unimportant cluster types (resulting from outliers) with supervised machine learning, -Filtering markers by cluster patterns to only those following biallelic patterns -Calling genotypes for the biallelic markers and outputing a genotype matrix compatible with common GWAS/GS methods

install.packages("remotes")
remotes::install_github("mtmcgowan/GGcall")