Description Usage Arguments Details Value
View source: R/marker.cluster.R
Clusters a single markers with Rmixmod
1 2 | marker.cluster(marker, data.type = "raw", iteration = 5,
model.list = c("Gaussian_pk_Lk_Ck", "Gaussian_pk_Lk_Bk"), clust.num = 8)
|
marker |
A project object, must be formatted correctly according to the project.create function |
data.type |
A string variable indicating which data should be used for clustering. ('raw', 'GSnorm','GStrans', 'thetaonly') |
iteration |
The number of times to re-cluster (can result in more stable results, but slows clustering time) |
model.list |
A list of Rmixmod models to use for cluster (Refer to Rmixmod documentation for more info) |
clust.num |
The maximum number of clusters to test for (lowering this speeds clustering time) |
USes the 'Rmixmod' package to fit a Gaussian mixture model using a supplied model list
A marker object updated with the best clustering result out of a defined number of iterations
This function relies on the following packages: Rmixmod
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.