marker.create: marker.create

In mtmcgowan/GGcall: Clusters Infinium SNP chip data in polyploid species and calls genotypes

Description

Creates an empty Marker object

Usage

marker.create(name = "NA", x = vector(), y = vector(),
  x.scaled = vector(), y.scaled = vector(), R = vector(),
  theta = vector(), theta.trans = vector(), mixmodout = NULL,
  miss.ind = NULL, clust.time = NULL, data.type = NULL)

Arguments

name	the marker ID
x	a vector of x.values
y	a vector of y.values
x.scaled	a vector of scaled x.values
y.scaled	a vector of scaled y.values
R	a vector of R values (either from GenomeStudio or calculated from raw values)
theta	a vector of theta values (either from GenomeStudio or calculated from raw values)
theta.trans	a vector of arcsin transformed values
mixmodout	cluster results from mixmodCluster
miss.ind	a vecor of missing value indices
clust.time	timing results for the clustering
data.type	Which data points were used for clustering

Value

An object storing all data for a single marker

mtmcgowan/GGcall documentation built on July 1, 2021, 4:14 a.m.