project.genotype: project.genotype

In mtmcgowan/GGcall: Clusters Infinium SNP chip data in polyploid species and calls genotypes

Description

Uses Rmixmod clusters from a GGcall project to call genotypes

Usage

project.genotype(project, format = "none")

Arguments

project	A project object, must contain cluster information from the project.cluster function
format	If clusters were called using raw intensities or scaled raw intensities, should they be transformed to theta an R? (can be 'none' or 'transformed')

Value

A list of genotype information: 3 matrices corresponding to the cluster, the x/theta cluster center, the y/R cluster center, the specified format, and the data type used for clustering

mtmcgowan/GGcall documentation built on July 1, 2021, 4:14 a.m.