project.call: project.call

In mtmcgowan/GGcall: Clusters Infinium SNP chip data in polyploid species and calls genotypes

Description

Calls genotypes for all markers in a project

Usage

project.call(project, call.type = "cat.all", min.prop = 0.01)

Arguments

project	A project object, must be formatted correctly according to the project.create function
call.type	A string variable indicating how to call clusters ('cat.all' = All markers w/ indicator expansion)
min.prop	The minimum proportion of the population for a cluster to be called

Details

USes the 'Rmixmod' package to fit a Gaussian mixture model using a supplied model list

Value

A marker object updated with the best clustering result out of a defined number of iterations

This function relies on the following packages: Rmixmod

mtmcgowan/GGcall documentation built on July 1, 2021, 4:14 a.m.