Description Format Details Value
High-grade serous ovarian cancers are heterogeneous not only in terms of clinical outcome but also at the molecular level. Our aim was to establish a novel risk classification system based on a gene expression signature for predicting overall survival, leading to suggesting novel therapeutic strategies for high-risk patients.In this large-scale cross-platform study of six microarray data sets consisting of 1,054 ovarian cancer patients, we developed a gene expression signature for predicting overall survival by applying elastic net and 10-fold cross-validation to a Japanese data set A (n = 260) and evaluated the signature in five other data sets. Subsequently, we investigated differences in the biological characteristics between high- and low-risk ovarian cancer groups.An elastic net analysis identified a 126-gene expression signature for predicting overall survival in patients with ovarian cancer using the Japanese data set A (multivariate analysis, P = 4 ?? 10(-20)). We validated its predictive ability with five other data sets using multivariate analysis (Tothill's data set, P = 1 ?? 10(-5); Bonome's data set, P = 0.0033; Dressman's data set, P = 0.0016; TCGA data set, P = 0.0027; Japanese data set B, P = 0.021). Through gene ontology and pathway analyses, we identified a significant reduction in expression of immune-response-related genes, especially on the antigen presentation pathway, in high-risk ovarian cancer patients.This risk classification based on the 126-gene expression signature is an accurate predictor of clinical outcome in patients with advanced stage high-grade serous ovarian cancer and has the potential to develop new therapeutic strategies for high-grade serous ovarian cancer patients.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 | experimentData(eset):
Experiment data
Experimenter name: Yoshihara K, Tsunoda T, Shigemizu D, Fujiwara H et al. High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway. Clin Cancer Res 2012 Mar 1;18(5):1374-85.
Laboratory: Yoshihara, Tanaka 2012
Contact information:
Title: High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway.
URL:
PMIDs: 22241791
Abstract: A 255 word abstract is available. Use 'abstract' method.
Information is available on: preprocessing
notes:
platform_title:
Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name vers
ion)
platform_shorttitle:
Agilent G4112F
platform_summary:
hgug4112a
platform_manufacturer:
Agilent
platform_distribution:
commercial
platform_accession:
GPL6480
version:
2015-09-22 19:55:29
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: A_23_P100001 A_23_P100011 ... A_32_P99902 (30936 total)
varLabels: probeset gene EntrezGene.ID best_probe
varMetadata: labelDescription
|
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 | assayData: 30936 features, 260 samples
Platform type:
Overall survival time-to-event summary (in years):
Call: survfit(formula = Surv(time, cens) ~ -1)
n events median 0.95LCL 0.95UCL
260.00 121.00 4.93 4.11 6.58
---------------------------
Available sample meta-data:
---------------------------
alt_sample_name:
10d 115d 116d 117d 119d 11d 120d 122d 123d 125Rd
1 1 1 1 1 1 1 1 1 1
129d 12d 130d 132d 134d 139d 140d 143d 144d 145d
1 1 1 1 1 1 1 1 1 1
146d 148d 150d 155d 156d 15d 160d 16d 171d 173d
1 1 1 1 1 1 1 1 1 1
174d 178d 17d 183d 184d 185d 186d 18d 20d 22d
1 1 1 1 1 1 1 1 1 1
23d 249d 257d 25d 260d 262d 264d 266d 267d 268d
1 1 1 1 1 1 1 1 1 1
269d 27d 299d 2d 300d 301d 302d 303d 304d 305d2
1 1 1 1 1 1 1 1 1 1
306d 307d 310d 318d 319d 320d2 323d 327d 330d 331d
1 1 1 1 1 1 1 1 1 1
333d2 335d 337d 340d 342d 346d 347d 348d2 350d 352d
1 1 1 1 1 1 1 1 1 1
353d 355d 356d 357d 358d 360d 362d 363d 365d 366d
1 1 1 1 1 1 1 1 1 1
367d 368d2 36d 38d 41d2R 42d 43d 44d 456d (Other)
1 1 1 1 1 1 1 1 1 161
sample_type:
tumor
260
histological_type:
ser
260
summarygrade:
high low
129 131
summarystage:
late
260
tumorstage:
3 4
204 56
substage:
a b c NA's
4 20 180 56
grade:
2 3
131 129
pltx:
y
260
tax:
y
260
days_to_death:
Min. 1st Qu. Median Mean 3rd Qu. Max.
30 810 1245 1344 1710 3840
vital_status:
deceased living
121 139
debulking:
optimal suboptimal
103 157
uncurated_author_metadata:
title: serous ovarian cancer 10d///geo_accession: GSM794865///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 79///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 79///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794865/GSM794865_s10d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 115d///geo_accession: GSM794867///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 12///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 69///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794867/GSM794867_s115d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 116d///geo_accession: GSM794868///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 14///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 51///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794868/GSM794868_s116d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 117d///geo_accession: GSM794869///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 18///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 38///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794869/GSM794869_s117d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 119d///geo_accession: GSM794870///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 40///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 40///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794870/GSM794870_s119d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 11d///geo_accession: GSM794866///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 46///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 76///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794866/GSM794866_s11d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 120d///geo_accession: GSM794872///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 6///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 52///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794872/GSM794872_s120d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 122d///geo_accession: GSM794873///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 8///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 25///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794873/GSM794873_s122d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 123d///geo_accession: GSM794874///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 15///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 22///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794874/GSM794874_s123d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 125Rd///geo_accession: GSM794875///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 10///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 31///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794875/GSM794875_s125Rd.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 129d///geo_accession: GSM794876///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 12///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 13///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794876/GSM794876_s129d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 12d///geo_accession: GSM794871///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 8///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 24///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794871/GSM794871_s12d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 130d///geo_accession: GSM794877///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 25///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 99///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794877/GSM794877_s130d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 132d///geo_accession: GSM794878///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 36///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 93///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794878/GSM794878_s132d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 134d///geo_accession: GSM794879///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIa///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 30///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 62///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794879/GSM794879_s134d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 139d///geo_accession: GSM794880///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 35///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 65///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794880/GSM794880_s139d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 140d///geo_accession: GSM794881///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 14///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 28///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794881/GSM794881_s140d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 143d///geo_accession: GSM794882///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 6///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 39///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794882/GSM794882_s143d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 144d///geo_accession: GSM794883///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 26///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 52///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794883/GSM794883_s144d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 145d///geo_accession: GSM794884///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 24///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 49///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794884/GSM794884_s145d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 146d///geo_accession: GSM794885///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 44///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 44///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794885/GSM794885_s146d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 148d///geo_accession: GSM794886///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 24///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 35///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794886/GSM794886_s148d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 150d///geo_accession: GSM794888///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 31///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 35///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794888/GSM794888_s150d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 155d///geo_accession: GSM794889///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 28///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 28///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794889/GSM794889_s155d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 156d///geo_accession: GSM794890///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 42///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 42///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794890/GSM794890_s156d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 15d///geo_accession: GSM794887///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 18///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 71///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794887/GSM794887_s15d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 160d///geo_accession: GSM794892///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 16///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 34///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794892/GSM794892_s160d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 16d///geo_accession: GSM794891///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 13///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 71///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794891/GSM794891_s16d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 171d///geo_accession: GSM794894///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 3///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 15///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794894/GSM794894_s171d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 173d///geo_accession: GSM794895///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 5///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 26///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794895/GSM794895_s173d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 174d///geo_accession: GSM794896///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 23///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 41///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794896/GSM794896_s174d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 178d///geo_accession: GSM794897///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 17///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 47///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794897/GSM794897_s178d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 17d///geo_accession: GSM794893///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 70///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 70///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794893/GSM794893_s17d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 183d///geo_accession: GSM794899///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 72///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 72///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794899/GSM794899_s183d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 184d///geo_accession: GSM794900///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 65///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 65///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794900/GSM794900_s184d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 185d///geo_accession: GSM794901///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 20///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 33///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794901/GSM794901_s185d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 186d///geo_accession: GSM794902///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 12///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 29///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794902/GSM794902_s186d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 18d///geo_accession: GSM794898///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 74///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 74///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794898/GSM794898_s18d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 20d///geo_accession: GSM794904///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 102///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 102///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794904/GSM794904_s20d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 22d///geo_accession: GSM794905///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 15///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 15///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794905/GSM794905_s22d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 23d///geo_accession: GSM794906///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 2///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 8///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794906/GSM794906_s23d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 249d///geo_accession: GSM794907///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 33///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 33///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794907/GSM794907_s249d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 257d///geo_accession: GSM794909///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 36///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 36///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794909/GSM794909_s257d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 25d///geo_accession: GSM794908///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 29///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 80///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794908/GSM794908_s25d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 260d///geo_accession: GSM794910///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 102///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 102///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794910/GSM794910_s260d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 262d///geo_accession: GSM794911///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 12///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 17///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794911/GSM794911_s262d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 264d///geo_accession: GSM794912///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 32///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 51///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794912/GSM794912_s264d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 266d///geo_accession: GSM794913///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 25///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 38///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794913/GSM794913_s266d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 267d///geo_accession: GSM794914///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 34///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 38///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794914/GSM794914_s267d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 268d///geo_accession: GSM794915///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 37///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 37///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794915/GSM794915_s268d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 269d///geo_accession: GSM794916///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 28///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 37///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794916/GSM794916_s269d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 27d///geo_accession: GSM794917///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 8///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 11///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794917/GSM794917_s27d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 299d///geo_accession: GSM794918///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 8///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 21///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794918/GSM794918_s299d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 2d///geo_accession: GSM794903///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 18///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 49///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794903/GSM794903_s2d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 300d///geo_accession: GSM794919///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 12///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 21///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794919/GSM794919_s300d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 301d///geo_accession: GSM794920///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 14///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 21///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794920/GSM794920_s301d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 302d///geo_accession: GSM794921///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 18///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 18///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794921/GSM794921_s302d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 303d///geo_accession: GSM794922///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 14///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 14///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794922/GSM794922_s303d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 304d///geo_accession: GSM794923///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 15///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 15///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794923/GSM794923_s304d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 305d2///geo_accession: GSM794924///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 72///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 72///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794924/GSM794924_s305d2.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 306d///geo_accession: GSM794925///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 46///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 46///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794925/GSM794925_s306d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 307d///geo_accession: GSM794926///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 46///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 46///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794926/GSM794926_s307d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 310d///geo_accession: GSM794927///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 6///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 6///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794927/GSM794927_s310d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 318d///geo_accession: GSM794928///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 9///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 13///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794928/GSM794928_s318d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 319d///geo_accession: GSM794929///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 12///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 43///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794929/GSM794929_s319d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 320d2///geo_accession: GSM794930///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 6///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 17///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794930/GSM794930_s320d2.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 323d///geo_accession: GSM794931///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 40///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 57///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794931/GSM794931_s323d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 327d///geo_accession: GSM794932///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 6///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 8///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794932/GSM794932_s327d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 330d///geo_accession: GSM794933///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 5///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 9///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794933/GSM794933_s330d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 331d///geo_accession: GSM794934///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 21///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 30///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794934/GSM794934_s331d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 333d2///geo_accession: GSM794935///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 29///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 29///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794935/GSM794935_s333d2.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 335d///geo_accession: GSM794936///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 12///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 16///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794936/GSM794936_s335d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 337d///geo_accession: GSM794937///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 13///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 40///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794937/GSM794937_s337d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 340d///geo_accession: GSM794938///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 2///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 2///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794938/GSM794938_s340d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 342d///geo_accession: GSM794939///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 44///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 44///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794939/GSM794939_s342d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 346d///geo_accession: GSM794940///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 23///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 36///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794940/GSM794940_s346d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 347d///geo_accession: GSM794941///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 18///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 48///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794941/GSM794941_s347d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 348d2///geo_accession: GSM794942///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 24///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 50///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794942/GSM794942_s348d2.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 350d///geo_accession: GSM794943///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 2///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 24///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794943/GSM794943_s350d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 352d///geo_accession: GSM794944///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 18///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 36///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794944/GSM794944_s352d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 353d///geo_accession: GSM794945///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 22///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 36///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794945/GSM794945_s353d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 355d///geo_accession: GSM794946///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 23///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 41///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794946/GSM794946_s355d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 356d///geo_accession: GSM794947///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 58///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 58///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794947/GSM794947_s356d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 357d///geo_accession: GSM794948///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 22///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 50///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794948/GSM794948_s357d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 358d///geo_accession: GSM794949///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 27///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 52///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794949/GSM794949_s358d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 360d///geo_accession: GSM794951///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 32///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 62///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794951/GSM794951_s360d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 362d///geo_accession: GSM794952///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 14///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 25///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794952/GSM794952_s362d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 363d///geo_accession: GSM794953///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 72///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 72///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794953/GSM794953_s363d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 365d///geo_accession: GSM794954///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 32///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 37///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794954/GSM794954_s365d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 366d///geo_accession: GSM794955///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 13///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 18///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794955/GSM794955_s366d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 367d///geo_accession: GSM794956///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 19///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 49///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794956/GSM794956_s367d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 368d2///geo_accession: GSM794957///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 8///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 32///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794957/GSM794957_s368d2.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 36d///geo_accession: GSM794950///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IV///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 23///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 28///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794950/GSM794950_s36d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 38d///geo_accession: GSM794958///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 15///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 64///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794958/GSM794958_s38d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 41d2R///geo_accession: GSM794960///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIb///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 99///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 104///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794960/GSM794960_s41d2R.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 42d///geo_accession: GSM794961///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 17///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 60///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794961/GSM794961_s42d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 43d///geo_accession: GSM794962///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 7///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 34///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794962/GSM794962_s43d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 44d///geo_accession: GSM794963///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 3///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: suboptimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 9///characteristics_ch1.7: rec (1): 1///characteristics_ch1.8: os (m): 17///characteristics_ch1.9: death (1): 1///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794963/GSM794963_s44d.txt.gz///data_row_count: 41093
1
title: serous ovarian cancer 456d///geo_accession: GSM794965///status: Public on Mar 01 2012///submission_date: Sep 12 2011///last_update_date: Mar 01 2012///type: RNA///channel_count: 1///source_name_ch1: high-grade serous ovarian cancer///organism_ch1: Homo sapiens///characteristics_ch1: tissue: high-grade serous ovarian cancer tumor///characteristics_ch1.1: grading: 2///characteristics_ch1.2: Stage: IIIc///characteristics_ch1.3: surgery status: optimal///characteristics_ch1.4: taxane: 1///characteristics_ch1.5: platinum: 1///characteristics_ch1.6: pfs (m): 28///characteristics_ch1.7: rec (1): 0///characteristics_ch1.8: os (m): 28///characteristics_ch1.9: death (1): 0///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)///label_ch1: Cy3///label_protocol_ch1: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).///taxid_ch1: 9606///hyb_protocol: Cy3-labeled cRNAs (1.65 g) were hybridized for 17 hours at 65C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.///scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565CA).///data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver.10.1 (Agilent Technologies) in the default settings.///platform_id: GPL6480///contact_name: Kosuke,,Yoshihara///contact_email: yoshikou@med.niigata-u.ac.jp///contact_department: Obstetrics and Gynecology///contact_institute: Niigata University///contact_address: 1-757 Asahimachi-dori///contact_city: Niigata///contact_zip.postal_code: 951-8510///contact_country: Japan///supplementary_file: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/samples/GSM794nnn/GSM794965/GSM794965_s456d.txt.gz///data_row_count: 41093
1
(Other)
161
duplicates:
GSE32062.GSE32062.GPL6480_GSM794933 GSE32062.GSE32062.GPL6480_GSM794935
1 1
NA's
258
|
An expression set
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