scIntegrate: scIntegrate

Description Usage Arguments Value Author(s)

View source: R/scIntegrate.R

Description

Integrate seurat objects into one

Usage

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scIntegrate(
  object.list = NULL,
  object.names = NULL,
  nVariable = 2000,
  nPC = 30,
  res = 0.5,
  batch.rm = "harmony"
)

Arguments

object.list

A list of seurat objects

object.names

An array of seurat object names

nVariable

Number of features to select as top variable features

nPC

Number of PCs to use

res

Resolution parameter to set. Default res=0.5

batch.rm

Remove batch effect with 'seurat' or 'harmony'. Default batch.rm='harmony'

Value

Seurat object.

Author(s)

rstatistics


ncrna/SCKIT documentation built on Jan. 2, 2022, 10:59 a.m.