scVolcanoPlot: scVolcanoPlot

Description Usage Arguments Author(s)

View source: R/scVolcanoPlot.R

Description

Volcano Plot for DGEs

Usage

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scVolcanoPlot(
  object = NULL,
  key = NULL,
  cluster = NULL,
  padj = 0.05,
  logFC = 0.585,
  cols = NULL,
  pt.size = NULL,
  species.by = NULL,
  top_n = NULL,
  labels = NULL,
  label.size = NULL,
  box = TRUE,
  raster = TRUE
)

Arguments

object

A seurat object.

key

The DE matrix are stored in object@misc$key

cluster

Cluster specified by the user

padj

Cutoff of adjusted pvalue

logFC

Log2FoldChange in DGEs

cols

Colours to pain the dots, default cols=c('#808080', '#810F7C', '#006D2C', '#000000')

pt.size

Size of the dots, default pt.size=1

species.by

Species which is used to divid cells into two groups

top_n

Number of up- and down-regulated genes to show

labels

An array of gene names to show

label.size

Font size of the labels, default label.size=2.5

box

Draws a rectangle behind the labels, default is TRUE

raster

Convert points to raster format, default is TRUE

Author(s)

Wei Zhang


ncrna/SCKIT documentation built on Jan. 2, 2022, 10:59 a.m.