scScoreDimPlot: scScoreDimPlot

Description Usage Arguments Value

View source: R/scScoreDimPlot.R

Description

MSigdb scoring DimPlot for single-cell clusters

Usage

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scScoreDimPlot(
  object = NULL,
  signature = NULL,
  reduction = NULL,
  cols = NULL,
  pt.size = NULL,
  split.by = NULL,
  title = NULL,
  ncol = NULL,
  raster = TRUE,
  scale = TRUE,
  col.min = NA,
  col.max = NA
)

Arguments

object

Seurat object

signature

Name of one gene set

reduction

Which dimensionality reduction to use

cols

Colors to plot

pt.size

Adjust point size to plot, default pt.size=0.5

split.by

Name of a metadata column to split plot by

title

Title of the plot

ncol

Number of columns for display the plots

raster

Convert points to raster format, default is TRUE

scale

Determine whether to scale the data, default is TRUE

col.min

Minimum scaled average score threshold (smaller values will be set to this)

col.max

Maximum scaled average score threshold (larger values will be set to this)

Value

ggplot2 object


ncrna/SCKIT documentation built on Jan. 2, 2022, 10:59 a.m.