alpacaRotationAnalysis: Community comparison method (CONDOR optimizaton)

In netZoo/netZooR: Unified methods for the inference and analysis of gene regulatory networks

Community comparison method (CONDOR optimizaton)

Description

Takes two networks, finds community structure of each one individually using CONDOR, and then ranks the nodes that show the biggest difference in their community membership.

Usage

alpacaRotationAnalysis(net.table)

Arguments

net.table

A table of edges, with the first column representing the TFs ("from" nodes) and the second column representing the targets ("to" nodes). The third column contains the edge weights corresponding to the control or healthy network, and the fourth column contains the edge weights for the disease network or network of interest.

Value

Vector of nodes ordered by how much they change their community membership between the two networks.

Examples

a <- 1 # example place holder

netZoo/netZooR documentation built on Oct. 16, 2024, 10:23 p.m.