checkTissuesToMerge | R Documentation |
Check tissues to merge based on gene expression profile
checkTissuesToMerge(
obj,
majorGroups,
minorGroups,
filterFun = NULL,
plotFlag = TRUE,
...
)
obj |
ExpressionSet object. |
majorGroups |
Column name in the phenoData slot that describes the general body region or site of the sample. |
minorGroups |
Column name in the phenoData slot that describes the specific body region or site of the sample. |
filterFun |
Filter group specific genes that might disrupt PCoA analysis. |
plotFlag |
TRUE/FALSE whether to plot or not |
... |
Parameters that can go to |
CMDS Plots of the majorGroupss colored by the minorGroupss. Optional matrix of CMDS loadings for each comparison.
checkTissuesToMerge
data(skin)
checkTissuesToMerge(skin,'SMTS','SMTSD')
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