condorQscore: Calculate Qscore for all nodes

In netZoo/netZooR: Unified methods for the inference and analysis of gene regulatory networks

Calculate Qscore for all nodes

Description

Qscore is designed to calculate the fraction of the modularity contributed by each node to its community's modularity

Usage

condorQscore(condor.object)

Arguments

condor.object

output of condorCluster or condorModularityMax

Value

condor.object list has condor.object$qscores added to it. this includes two data.frames, blue.qscore and red.qscore which have the qscore for each red and blue node.

Examples

r = c(1,1,1,2,2,2,3,3,3,4,4);
b = c(1,2,3,1,2,4,2,3,4,3,4);
reds <- c("Alice","Sue","Janine","Mary")
blues <- c("Bob","John","Ed","Hank")
elist <- data.frame(red=reds[r],blue=blues[b])
condor.object <- createCondorObject(elist)
condor.object <- condorCluster(condor.object)
condor.object <- condorQscore(condor.object)   

netZoo/netZooR documentation built on Oct. 16, 2024, 10:23 p.m.