alpacaTestNodeRank: Enrichment in ranked list
In netZoo/netZooR: Unified methods for the inference and analysis of gene regulatory networks
alpacaTestNodeRank R Documentation
Enrichment in ranked list
Description
This function computes the enrichment of selected nodes in a ranked list, using Wilcoxon, Kolmogorov-Smirnov, and Fisher exact tests.
Usage
alpacaTestNodeRank(node.ordered, true.pos)
Arguments
node.ordered
An ordered list of nodes (high-scoring to low-scoring).
true.pos
The selected set of nodes being tested for enrichment among the ranked list.
Value
A vector of 4 values. 1) Wilcoxon p-value, 2) KS p-value, 3) Fisher p-value, 4) Fisher odds ratio.
Examples
a <- 1 # example place holder
netZoo/netZooR documentation built on June 8, 2024, 6:20 a.m.
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| alpacaTestNodeRank | R Documentation |
Enrichment in ranked list
Description
This function computes the enrichment of selected nodes in a ranked list, using Wilcoxon, Kolmogorov-Smirnov, and Fisher exact tests.
Usage
alpacaTestNodeRank(node.ordered, true.pos)
Arguments
node.ordered |
An ordered list of nodes (high-scoring to low-scoring). |
true.pos |
The selected set of nodes being tested for enrichment among the ranked list. |
Value
A vector of 4 values. 1) Wilcoxon p-value, 2) KS p-value, 3) Fisher p-value, 4) Fisher odds ratio.
Examples
a <- 1 # example place holder
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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