fitSIBERonMat: fit SIBER on a matrix, one row at a time

Description Usage Arguments Value

Description

this function enables parallel through plyr package

Usage

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fitSIBERonMat(mat, model = "NL", prune = TRUE, q = 0.03,
  parallel = TRUE, core = 10)

Arguments

mat

matrix of expression, methylation and so on

model

model as in SIBER

prune

logical, whether to prune sigma1, sigma2 for with a specified percentile; this is to obtain stable BI estimate due to extremely small sigma estimate, especially in the V model

parallel

logical

core

number of cores to register for parallel computing

Value

a matrix


nickytong/GenAnalysis documentation built on July 20, 2019, 8:57 a.m.