fitSIBERonMat_Bygroup: fit SIBER on matrix but split by group

In nickytong/GenAnalysis: Genomic Analysis

Description

this is written to facilitate pancancer analysis where BI is computed across tumors, thus, a group variable

Usage

fitSIBERonMat_Bygroup(mat, group, addAll = TRUE, addAllName = "all", ...)

Arguments

mat	matrix of expression, methylation and so on
group	a vector indicating the grouping membership
addAllName	the name for the all group
...	additional parameters to fitSIBERonMat such as model='NL', prune=TRUE, q=0.01, parallel=TRUE, core=10

Value

a data frame of BI

nickytong/GenAnalysis documentation built on July 20, 2019, 8:57 a.m.