formatAnnotation4aheatmap: Prepare annotation data frame so that aheatmap can show it
In nickytong/GenAnalysis: Genomic Analysis

Description Usage Arguments Details Value

aheatmap requires the annotation data frame to have rownames identical to colnames of the heatmap matrix; otherwise, nothing is drawn

1	formatAnnotation4aheatmap(dat, sampleNames, minUV = 12)

`dat`	annotation data frame, one row per sample
`sampleNames`	the colnames of the matrix in heatmap
`minUV`	minimum unique value to not be a factor

the main goal for this function is to (1) add rownames (2) convert categorical variables to factor so that aheatmap can draw it; rownames can be passed to set rownames; of no rownames, aheatmap will not draw the column bar the conversion from categorical to factor is achieved using formatVec() as the engine.

a formated data frame

nickytong/GenAnalysis documentation built on July 20, 2019, 8:57 a.m.