Files in nickytong/GenAnalysis
Genomic Analysis
DESCRIPTION
NAMESPACE
NEWS
R/TestAndCorr_p.R
R/aheatmap.R
R/aheatmat.R
R/config_p.R
R/data.R
R/formatting_p.R
R/myplots_p.R
R/new.R
R/opencpu.R
R/qplot_survival_p.R
R/utils_p.R
README.md
data/RPPAdat.rda
man/BootstrapGenes.Rd
man/RPPAdat.Rd
man/SIBER2.Rd
man/WriteXLSOR.Rd
man/WriteXLS_arrayOR.Rd
man/WriteXLS_listOR.Rd
man/aMatrix.Rd
man/aheatmap.Rd
man/aheatmap2.Rd
man/aheatmat.Rd
man/aheatmatcor.Rd
man/anovaP.Rd
man/aoMatrix.Rd
man/augmentMatrixColumnByID.Rd
man/augmentMatrixColumnByID_update.Rd
man/augmentMatrixRowByID.Rd
man/autocolpal4DF.Rd
man/buildSilhouette.Rd
man/buildapp.Rd
man/buildapp0.Rd
man/categorizePvec.Rd
man/cluster_mat.Rd
man/colorpalette2colvec.Rd
man/combine_cormat.Rd
man/convert_annotations.Rd
man/cophCorFromConsMat.Rd
man/copheneticCoef.Rd
man/corTest.Rd
man/coxphP2.Rd
man/create_bum.Rd
man/decideOrder.Rd
man/df_force_factor.Rd
man/df_format_df.Rd
man/dichotomizeExpr.Rd
man/dichotomizeExpr_BI.Rd
man/dichotomizeExpr_quantile.Rd
man/dispersionFromConsMat.Rd
man/doccoRmd.Rd
man/emptydfFromDF.Rd
man/fitSIBERonMat.Rd
man/fitSIBERonMat_Bygroup.Rd
man/fn_TWanova.Rd
man/formatAnnotation4aheatmap.Rd
man/formatDF.Rd
man/formatLevel.Rd
man/formatVec.Rd
man/genbreaks.Rd
man/generate_breaks.Rd
man/generate_breaks0.Rd
man/getDefaultBarColList.Rd
man/getPvecSmry.Rd
man/getTopNindex.Rd
man/getTopNvalue.Rd
man/get_pal.Rd
man/get_stretch.Rd
man/getfisherP.Rd
man/getter.Rd
man/getter.augMat.Rd
man/getter.colpal4DF.Rd
man/getter.rowanovaMatVec.Rd
man/getter.rowcorMatVec.Rd
man/getter.rowttestMatVec.Rd
man/ggKM.Rd
man/ggKMcat.Rd
man/guessAlpha.Rd
man/guessAlpha_line.Rd
man/guessCEX.Rd
man/guess_angle.Rd
man/guess_nrowL.Rd
man/heatm.Rd
man/heatm.rowcorMatVec.Rd
man/heatm.rowttestMatVec.Rd
man/hist.rowTWanovaMatVec.Rd
man/hist.rowanovaMatVec.Rd
man/hist.rowcorMatVec.Rd
man/hist.rowfisherMatVec.Rd
man/hist.rowpairedttestMatVec.Rd
man/hist.rowttestMatVec.Rd
man/isCat.Rd
man/isCont.Rd
man/isTopN.Rd
man/is_continuous.Rd
man/iscatDF.Rd
man/ixglobal2local.Rd
man/ixlocal2global.Rd
man/ixunify2index.Rd
man/lm_xy.Rd
man/logic2sortedIndex.Rd
man/makeColMat.Rd
man/makestring.Rd
man/mapNames.Rd
man/mapNames4mat.Rd
man/maskByLimit.Rd
man/mylibrary.Rd
man/n_unique.Rd
man/name-of-the-vec-as-in-the-named-list-of-colpal.Rd
man/namedColVec.Rd
man/noNA.Rd
man/nonNumeric2FactorByColumn.Rd
man/overwritef.Rd
man/pairedttestP.Rd
man/parse_coxphP2.Rd
man/pdfOR.Rd
man/plainRmd.Rd
man/plot.colpal4DF.Rd
man/plot.fn_TWanova.Rd
man/plot.phm.Rd
man/plot.prepcolbar.Rd
man/plot.rowanovaMatVec.Rd
man/plot.rowcorMatVec.Rd
man/plot.rowttestMatVec.Rd
man/plot4rowanovaMatVec.Rd
man/plot4rowcorMatVec.Rd
man/plot4rowttestMatVec.Rd
man/plotBumFDR.Rd
man/plotCCC.Rd
man/plotCatCat.Rd
man/plotContCat.Rd
man/plotContCont.Rd
man/plotHeatmap.Rd
man/plotHeatmapTable.Rd
man/plotKM.Rd
man/plotKM0.Rd
man/plotMeanSD4mat.Rd
man/plotScatter.Rd
man/plotSummaryFromConsensusClusterPlus.Rd
man/polrP.Rd
man/prepDat4pairedttest.Rd
man/prepare4ColList.Rd
man/prepare4aheatmap.Rd
man/prepcolbar.Rd
man/print.phm.Rd
man/printPvecSmry.Rd
man/rcor.Rd
man/rcorrTest.Rd
man/rowMatVecDo.Rd
man/rowTWanovaMatVec.Rd
man/rowanovaMatVec.Rd
man/rowcorMatMat_L.Rd
man/rowcorMatVec.Rd
man/rowcorMatVec_Bygroup.Rd
man/rowdoMatVec_Bygroup.Rd
man/rowfisherMatVec.Rd
man/rowkmMatVec.Rd
man/rowlmMatVec.Rd
man/rowpairedttestMatVec.Rd
man/rowranktestMatVec.Rd
man/rowttestMatMat_L.Rd
man/rowttestMatVec.Rd
man/s_unique.Rd
man/safelog.Rd
man/saveOR.Rd
man/scale_mat.Rd
man/scatter.Rd
man/scatter.rowTWanovaMatVec.Rd
man/scatter.rowanovaMatVec.Rd
man/scatter.rowcorMatVec.Rd
man/scatter.rowfisherMatVec.Rd
man/scatter.rowkmMatVec.Rd
man/scatter.rowpairedttestMatVec.Rd
man/scatter.rowttestMatVec.Rd
man/scatter_rowTWanovaMatVec.Rd
man/scatter_rowanovaMatVec.Rd
man/scatter_rowcorMatVec.Rd
man/scatter_rowttestMatVec.Rd
man/selectGeneFromMeanSD.Rd
man/statContCont.Rd
man/str_extract2.Rd
man/subsetMainMat.Rd
man/swap.Rd
man/testObject.Rd
man/test_tree_split.Rd
man/testree.Rd
man/testree.phm.Rd
man/theme_base.Rd
man/toFC.Rd
man/toNaturalVar.Rd
man/transform_smat.Rd
man/truncByLimit.Rd
man/truncByQuantile.Rd
man/truncMat.Rd
man/ttestP.Rd
man/updatePal.Rd
man/vec2colvec.Rd
man/venndiagram.Rd
man/venndiagram.rowTWanovaMatVec.Rd
man/whichCat.Rd
man/whichCont.Rd
man/wilcoxP.Rd
man/write.csvOR.Rd
