prepcolbar: build colmat/colmap given pheno (colwise of data frame) and...
In nickytong/GenAnalysis: Genomic Analysis
Description
Usage
Arguments
Value
Description
building colmap depends on iscat status of each column, catstat. catstat is first searched with attributes; if it is not specified, iscatDF is used to calculate it.
therefore, the default assumes the user has prepared pheno in a way that categorical vars are either character or factor and cont vars are numeric.
Usage
1
prepcolbar(pheno, colpal = NULL)
Arguments
pheno
a data frame where columns represent different column bars (in a heatmap)
colpal
color pallete, a named list of color vectors. When not specified, autocolpal4DF will be used to generate the default.
Value
a list with elements mapL (a list of map for color legend) and colmat (color matrix for colbar).
input pheno and colpal are attached as attributes
nickytong/GenAnalysis documentation built on July 20, 2019, 8:57 a.m.
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Description Usage Arguments Value
Description
building colmap depends on iscat status of each column, catstat. catstat is first searched with attributes; if it is not specified, iscatDF is used to calculate it. therefore, the default assumes the user has prepared pheno in a way that categorical vars are either character or factor and cont vars are numeric.
Usage
1 | prepcolbar(pheno, colpal = NULL)
|
Arguments
pheno |
a data frame where columns represent different column bars (in a heatmap) |
colpal |
color pallete, a named list of color vectors. When not specified, autocolpal4DF will be used to generate the default. |
Value
a list with elements mapL (a list of map for color legend) and colmat (color matrix for colbar). input pheno and colpal are attached as attributes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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