Description Usage Arguments Value
ordered horizontal bar plot for rowanovaMatVec
1 2 3 4 5 6 | plot4rowanovaMatVec(x, rowInfo = NULL, decreasing = FALSE,
dataMode = "IC50", groupShown = NULL, ylab = NULL, xlab = NULL,
sizex = 12, sizey, size_group = 10, main = NULL, showP = "None",
pthr = 1, colorSignif = TRUE, legend.position = c(0.85, 0.2),
legend.title = "Significance", truncFClow = -Inf, truncFChigh = Inf,
barWidth = 0.8, verbose = FALSE)
|
rowInfo |
alternative rownames to show on the figure |
decreasing |
logic, decreasing order of p value used to sort the rows (genes) based on anovaP. |
dataMode |
a string used to label the x-axis. Default is 'IC50' for IC50 t-test; Please use meaning string relevant to the data. |
groupShown |
string for group to shown, leading a t test type (FC vs adj p value). e.g. 'HCC4006_ER1-HCC4006' |
sizex |
x axis label size |
sizey |
y axis label size |
size_group |
label size for facets |
showP |
do not show P value on graph ('None'); show actual P ('Value'); show P category ('Category') |
pthr |
filtering by p value. Rows with larger P value will be deleted. Default is to use all rows (pthr=1) |
legend.position |
position for the legend if P value is show as category |
legend.title |
title of the legend |
truncFClow |
cutoff to truncate FC lower than this value. Defalt is -Inf, which means no truncation on small FC (negative) value |
truncFChigh |
cutoff to truncate FC higher than this value. Defalt is Inf, which means no truncation on large FC (usually positive) value |
barWidth |
relative barwidth (0~1) |
a ggplot2 object
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