Description Usage Arguments Value
View source: R/TestAndCorr_p.R
ordered bar plot for rowcorMatVec class
1 2 3 4 5 6 | plot4rowcorMatVec(res, rowInfo = NULL, decreasing = TRUE,
dataMode = "IC50", ylab = NULL, xlab = NULL, sizex, sizey = 12,
main = NULL, tag = "", showP = "None", pthr = 1, colorSignif = TRUE,
legend.position = c(0.85, 0.85), legend.title = "Significance",
showLegend = TRUE, truncCorlow = -1, truncCorhigh = 1,
barWidth = NULL, corlim, coord_flip = FALSE, plot = TRUE)
|
rowInfo |
alternative rownames to show on the figure |
decreasing |
logic, decreasing order of bars or not. |
dataMode |
a string used to label the x-axis. Default is 'IC50' for IC50 t-test; Please use meaning string relevant to the data. |
sizex |
x axis label size |
sizey |
y axis label size |
showP |
do not show P value on graph (as part of gene name) ('None'); show actual P ('Value'); show P category ('Category') |
pthr |
filtering by p value. Rows with larger P value will be deleted. Default is to use all rows (pthr=1) |
legend.position |
position for the legend if P value is show as category |
legend.title |
title of the legend |
truncCorlow |
cutoff to truncate correlation lower than this value. Defalt is -1, which means no truncation on small corr (negative) value |
truncCorhigh |
cutoff to truncate correlation higher than this value. Defalt is 1, which means no truncation on large corr (usually positive) value |
barWidth |
relative barwidth (0~1); if this is too small, some bars might be displayed as missing; so set it larger |
corlim |
correlation limit; default is not specified which will use observed correlation limit; can specify c(-1, 1) to see this range. |
coord_flip |
whether to flip coordinate; default sets y as the correlation; when coord_flip=TRUE, x is plotted as correlation |
a ggplot2 object
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