Description Usage Arguments Value
View source: R/TestAndCorr_p.R
ordered bar plot for rowcorMatVec class
| 1 2 3 4 5 6 | plot4rowcorMatVec(res, rowInfo = NULL, decreasing = TRUE,
  dataMode = "IC50", ylab = NULL, xlab = NULL, sizex, sizey = 12,
  main = NULL, tag = "", showP = "None", pthr = 1, colorSignif = TRUE,
  legend.position = c(0.85, 0.85), legend.title = "Significance",
  showLegend = TRUE, truncCorlow = -1, truncCorhigh = 1,
  barWidth = NULL, corlim, coord_flip = FALSE, plot = TRUE)
 | 
| rowInfo | alternative rownames to show on the figure | 
| decreasing | logic, decreasing order of bars or not. | 
| dataMode | a string used to label the x-axis. Default is 'IC50' for IC50 t-test; Please use meaning string relevant to the data. | 
| sizex | x axis label size | 
| sizey | y axis label size | 
| showP | do not show P value on graph (as part of gene name) ('None'); show actual P ('Value'); show P category ('Category') | 
| pthr | filtering by p value. Rows with larger P value will be deleted. Default is to use all rows (pthr=1) | 
| legend.position | position for the legend if P value is show as category | 
| legend.title | title of the legend | 
| truncCorlow | cutoff to truncate correlation lower than this value. Defalt is -1, which means no truncation on small corr (negative) value | 
| truncCorhigh | cutoff to truncate correlation higher than this value. Defalt is 1, which means no truncation on large corr (usually positive) value | 
| barWidth | relative barwidth (0~1); if this is too small, some bars might be displayed as missing; so set it larger | 
| corlim | correlation limit; default is not specified which will use observed correlation limit; can specify c(-1, 1) to see this range. | 
| coord_flip | whether to flip coordinate; default sets y as the correlation; when coord_flip=TRUE, x is plotted as correlation | 
a ggplot2 object
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