venndiagram.rowTWanovaMatVec: venndiagram method for rowTWanovaMatVec class

Description Usage Arguments

Description

When number of cell lines is smaller than 5, venn2 would be used; otherwise, imageVenn would be used to display genes selected at a given method (as selected using create_bum)

Usage

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## S3 method for class 'rowTWanovaMatVec'
venndiagram(x, FDR = NULL, selVar = "gSelectInd",
  pcutoff = 0.05, oma = c(6, 2, 1, 2), use = NULL, cat.pos = 0,
  cat.dist = 0.03, main = "", ...)

Arguments

x

a rowTWanovaMatVec class (a data frame)

use

either 'venn2' or 'imageVenn'; default is NULL, in which case 'venn2' would be selected if less or equal to 5 cell lines

cat.pos

Vector giving the position (in degrees) of each category name along the circle, with 0 at 12 o'clock, being on top

cat.dist

Vector giving the distance (in npc units) of each category name from the edge of the circle (can be negative)

...

additional parameters to plot function


nickytong/GenAnalysis documentation built on July 20, 2019, 8:57 a.m.