venndiagram.rowTWanovaMatVec: venndiagram method for rowTWanovaMatVec class

In nickytong/GenAnalysis: Genomic Analysis

Description

When number of cell lines is smaller than 5, venn2 would be used; otherwise, imageVenn would be used to display genes selected at a given method (as selected using create_bum)

Usage

## S3 method for class 'rowTWanovaMatVec'
venndiagram(x, FDR = NULL, selVar = "gSelectInd",
  pcutoff = 0.05, oma = c(6, 2, 1, 2), use = NULL, cat.pos = 0,
  cat.dist = 0.03, main = "", ...)

Arguments

x	a rowTWanovaMatVec class (a data frame)
use	either 'venn2' or 'imageVenn'; default is NULL, in which case 'venn2' would be selected if less or equal to 5 cell lines
cat.pos	Vector giving the position (in degrees) of each category name along the circle, with 0 at 12 o'clock, being on top
cat.dist	Vector giving the distance (in npc units) of each category name from the edge of the circle (can be negative)
...	additional parameters to plot function

nickytong/GenAnalysis documentation built on July 20, 2019, 8:57 a.m.