Description Usage Arguments Value
ordered horizontal bar plot for rowttestMatVec
1 2 3 4 5 6 7 8 | plot4rowttestMatVec(res, useFC = FALSE, rowInfo = NULL, decreasing = TRUE,
dataMode = "IC50", ylab = NULL, xlab = NULL, sizex = 12, sizey,
sizeyadj = 1, size.title.x = 14, size.title.y = 14, main = NULL,
showP = "None", pthr = 1, colorSignif = TRUE,
legend.position = c(0.85, 0.85), legend.title = "Significance",
truncFClow = -4, truncFChigh = 4, barWidth = 0.8, verbose = FALSE,
fillCol = c("#ED281E", "#2834A4", "#EDB51E", "gray"), coord_flip = TRUE,
anglex = NULL, angley = NULL, plot = TRUE)
|
useFC |
whether to use FC or mDiff |
rowInfo |
alternative rownames to show on the figure |
decreasing |
logic, decreasing order of bars or not. |
dataMode |
a string used to label the x-axis. Default is 'IC50' for IC50 t-test; Please use meaning string relevant to the data. |
sizex |
x axis tick text size |
sizey |
y axis tick text size |
size.title.x |
x label size |
size.title.y |
y label size |
showP |
do not show P value on graph ('None'); show actual P ('Value'); show P category ('Category') |
pthr |
filtering by p value. Rows with larger P value will be deleted. Default is to use all rows (pthr=1) |
legend.position |
position for the legend if P value is show as category |
legend.title |
title of the legend |
truncFClow |
cutoff to truncate FC lower than this value. Defalt is -Inf, which means no truncation on small FC (negative) value |
truncFChigh |
cutoff to truncate FC higher than this value. Defalt is Inf, which means no truncation on large FC (usually positive) value |
barWidth |
relative barwidth (0~1) |
a ggplot2 object
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