plot4rowttestMatVec: ordered horizontal bar plot for rowttestMatVec

Description Usage Arguments Value

Description

ordered horizontal bar plot for rowttestMatVec

Usage

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plot4rowttestMatVec(res, useFC = FALSE, rowInfo = NULL, decreasing = TRUE,
  dataMode = "IC50", ylab = NULL, xlab = NULL, sizex = 12, sizey,
  sizeyadj = 1, size.title.x = 14, size.title.y = 14, main = NULL,
  showP = "None", pthr = 1, colorSignif = TRUE,
  legend.position = c(0.85, 0.85), legend.title = "Significance",
  truncFClow = -4, truncFChigh = 4, barWidth = 0.8, verbose = FALSE,
  fillCol = c("#ED281E", "#2834A4", "#EDB51E", "gray"), coord_flip = TRUE,
  anglex = NULL, angley = NULL, plot = TRUE)

Arguments

useFC

whether to use FC or mDiff

rowInfo

alternative rownames to show on the figure

decreasing

logic, decreasing order of bars or not.

dataMode

a string used to label the x-axis. Default is 'IC50' for IC50 t-test; Please use meaning string relevant to the data.

sizex

x axis tick text size

sizey

y axis tick text size

size.title.x

x label size

size.title.y

y label size

showP

do not show P value on graph ('None'); show actual P ('Value'); show P category ('Category')

pthr

filtering by p value. Rows with larger P value will be deleted. Default is to use all rows (pthr=1)

legend.position

position for the legend if P value is show as category

legend.title

title of the legend

truncFClow

cutoff to truncate FC lower than this value. Defalt is -Inf, which means no truncation on small FC (negative) value

truncFChigh

cutoff to truncate FC higher than this value. Defalt is Inf, which means no truncation on large FC (usually positive) value

barWidth

relative barwidth (0~1)

Value

a ggplot2 object


nickytong/GenAnalysis documentation built on July 20, 2019, 8:57 a.m.