plotMeanSD4mat: plot mean vs sd for a matrix for quick QC/filtering

In nickytong/GenAnalysis: Genomic Analysis

Description

plot mean vs sd for a matrix for quick QC/filtering

Usage

plotMeanSD4mat(mat, type = "row", useMAD = FALSE, alpha = NA,
  qx = c(0.3, 0.5), qy = c(0.3, 0.5), main = NA,
  quantileCol = "#B0AEA9", plot = TRUE)

Arguments

mat	a matrix
type	compute summary on rows or columns
useMAD	whether to use MAD (more robust) rather than SD. Default is FALSE
alpha	alpha blending for the points
qx	quantile to be show for Mean (0~1)
qy	quantile to be show for SD (0~1)
main	main title
quantileCol	line colors for quantiles
plot	plot or return the summary

nickytong/GenAnalysis documentation built on July 20, 2019, 8:57 a.m.