Man pages for nickytong/drexplorer
Dose-response Explorer
| CI.delta | Estimate the interaction index as well as its confidence... |
| computeAUC | Calculate AUC from a fitted object |
| computeIC | Compute the IC values at specified percentiles |
| computeICvariance | compute variance of IC value at each inhibition percentage... |
| datNCI60 | Example raw data for calculating GI50, TGI and LC50 |
| datSplit | Split a drug-response data |
| detect_ray_design | detect if a experiment is fixed-ray design and prepare input... |
| drexplorerGUI_1 | Launch Graphical User Interface (GUI) for dose response curve... |
| drexplorerGUI_2 | Launch Graphical User Interface (GUI) for drug interaction... |
| drexplorer-package | Dose-response Explorer |
| drFit | Fit a dose-response model |
| drFit-class | Class '"drFit"' |
| drModels | Show available dose-response models with direct support. |
| drOutlier | Identifying outliers for dose-response data |
| fHill | the Hill equation function |
| fitHSA_ray | fit HSA and Bliss model given a fixed ratio design with input... |
| fitHSA_ray_boot | bootstrap of fitHSA_ray to obtain variation of deltaAUC |
| fitIAI | Estimate the interaction index as well as its confidence... |
| fitIAI_mod | re-implemented IAI calculation with model selection and CI |
| fitIAI_mod0 | re-implemented IAI calculation with model selection and CI |
| fit_median_efect | fit median-effect model for 2-drug combination with a fixed... |
| fitOneExp | Fit multiple dose response models for a single drug in a... |
| hillFit | fit Hill equation on dose response data |
| lines-drFit-method | lines method for drFit object |
| lines.hillFit | lines method for hillFit class |
| lines.nci60Fit | lines method for nci60Fit class |
| nci60Fit | implementation of NCI60 method (GI50, TGI, LC50) for dose... |
| NewmanTables | Table III and IV published by Newman |
| NewmanTest | Identifying outliers with the range to standard deviation... |
| nl22B2 | The drug combination data between SCH66336 and 4-HPR. This is... |
| plotCCC | Calculates Concordance Correlation Coefficient (CCC) to... |
| plot-drFit-method | plot method for drFit object |
| plot.hillFit | plot method for hillFit class |
| plotHSA_ray | plot the ray design from fit object returned by fitHSA_ray |
| plotIAI | Visualize interaction index |
| plotIAI_mod | plot for the fitted object from model selection |
| plot_median_effect | generate plot for the fit from median-effect model |
| plot.nci60Fit | plot method for nci60Fit class |
| plotOneExp | plot dose response curve from fitOneExp() result |
| predict-drFit-method | predict method for drFit object |
| predict.hillFit | predict method for hillFit class |
| predict.nci60Fit | predict method for nci60Fit class |
| prepDRdat | prepare dose-reponse data |
| prepDRdat2expInfo | from prepared data to experiment setup information |
| recommendedModels | frequently used models |
| ryegrass | ryegrass dataset from drc package |
| toget | general getter function for attributes in an object |
| UMSCC22B | The drug combination data of squamous cell carcinoma cells... |
