ms_innerread: ms_innerread

In nkdailingyun/mineCETSA: Processing and Visualization of Proteome-wide MS-CETSA data

Description

Internal function to parse and read in data from tab delimited files exported from Proteome Discoverer

Usage

ms_innerread(
  file,
  fchoose,
  treatment,
  nread,
  abdread,
  PDversion,
  refchannel,
  channels
)

Arguments

file	file name to import
fchoose	whether to choose file interactively
treatment	names of treatments (temperature, dose, time) applied to samples
nread	number of reading channels, should match the number of channels used
abdread	whether to read in protein abundance data
PDversion	which version of Proteome Discoverer the data is searched, possible values 20,21,22,24
refchannel	names of reference channel used in Proteome Discoverer search, such as 126
channels	names of the read-in channels
...	other arguments ignored (for compatibility with generic)

Value

a dataframe

Examples

## Not run: 
 ms_innerread("file.txt")

## End(Not run)

nkdailingyun/mineCETSA documentation built on Feb. 27, 2021, 8:26 p.m.