ms_isothermal_line_innerplot: ms_isothermal_line_innerplot

In nkdailingyun/mineCETSA: Processing and Visualization of Proteome-wide MS-CETSA data

Description

Internal function to generate ggplot objects for isothermal data in a curve plot format

Usage

ms_isothermal_line_innerplot(
  data,
  legenddata,
  levelvector,
  nread,
  robustfitting,
  minireplicate,
  withset,
  witherrorbar,
  loess,
  dotconnect,
  xtransform,
  xinterval,
  presetcolor,
  colorpanel,
  layout,
  toplabel,
  leftlabel,
  bottomlabel,
  shadearea,
  shadeoutlinecolor,
  shadefillcolor,
  returnplots,
  outdir
)

Arguments

data	isothermal dataset to plot
legenddata	dataset used for condition extraction, at least one protein inside this dataset should contains the full set of experiment conditions
levelvector	a vector of experimental conditions, not complusory for isothermal functions
nread	number of reading channels or sample treatements
robustfitting	whether to apply robust fitting, which is new since v.0.3.7
minireplicate	number of replicates to keep in final data
withset	whether there is set column to perform facet_grid
loess	whether to perform curve fitting using loess model
dotconnect	whether to simply dot connect the readings for each curve
xtransform,	how should the x scale be transform, one value among c("xsqrt","xcubert","xlog10","xlog2","xlinear")
xinterval	a number indicating the numerical interval for linear x-axis
presetcolor	whether to use the pre-defined color scheme
colorpanel	a vector of customizable color scheme provided by the user
layout	a vector indicating the panel layout for multi-panel plots per page
toplabel	textual label at the top of the page
leftlabel	textual label at the left side of the page
bottomlabel	textual label at the bottom of the page
shadearea	a four element vector indicating the xmin, xmax, ymin, ymax for x and y axis for shading
shadeoutlinecolor	color used to shade the area, default value is black
shadefillcolor	color used to shade the area, default value is gray90
returnplots	whether to return the plot objects

Value

a list of ggplot2 object

nkdailingyun/mineCETSA documentation built on Feb. 27, 2021, 8:26 p.m.