ms_rawread: ms_rawread

In nkdailingyun/mineCETSA: Processing and Visualization of Proteome-wide MS-CETSA data

Description

Function to parse and read in CETSA melt curve data from tab delimited files exported from Proteome Discoverer

Usage

ms_rawread(
  filevector,
  fchoose = FALSE,
  temp = c(37, 40, 43, 46, 49, 52, 55, 58, 61, 64),
  nread = 10,
  abdread = FALSE,
  PDversion = 21,
  refchannel = "126",
  channels = NULL
)

Arguments

filevector	a file name or a vector of filenems to import
fchoose	whether to choose file interactively, default set to FALSE
temp	a vector of heating temperature applied to CETSA melt samples, in the same order as channels
nread	number of reading channels, should match the number of channels used, default value 10
abdread	whether to read in protein abundance data, default set to FALSE
PDversion	which version of Proteome Discoverer the data is searched, possible values 20,21,22,24
refchannel	names of reference channel used in Proteome Discoverer search, default value 126
channels	names of the read-in channels, default value NULL, it would automatically match the provided channel number when it is 10 or 11

Value

a dataframe

See Also

ms_ITTR_rawread for time response data

ms_ITDR_rawread for dose response data

Examples

## Not run: 
 LY <- ms_rawread(c("LY_K562_Ctrl_rep1_PD21_Proteins copy.txt",
 "LY_K562_Ctrl_rep2_PD21_Proteins copy.txt",
 "LY_K562_Treatment_rep1_PD21_Proteins copy.txt",
 "LY_K562_Treatment_rep2_PD21_Proteins copy.txt"))

## End(Not run)

nkdailingyun/mineCETSA documentation built on Feb. 27, 2021, 8:26 p.m.