ms_melt_innerplot: ms_melt_innerplot

In nkdailingyun/mineCETSA: Processing and Visualization of Proteome-wide MS-CETSA data

Description

Internal function to generate ggplot objects for CETSA melt curve data

Usage

ms_melt_innerplot(
  data,
  nread,
  topasone,
  dotconnect,
  printcount,
  PSM_annod,
  Pep_annod,
  annotypos,
  annotyinterval,
  colorpanel,
  plotlegend,
  commonlegend,
  toplabel,
  leftlabel,
  bottomlabel,
  withset,
  layout,
  returnplots,
  outdir
)

Arguments

data	melt curve dataset to plot
nread	number of reading channels or sample treatments
topasone	whether the top plateau has to be fixed, i.e., 1.0
dotconnect	whether to simply dot connect the readings for each curve
printcount	whether to annotate the plots with PSM and uniPeptide number
PSM_annod	dataframe containing the PSM number information
Pep_annod	dataframe containing the uniPeptide number information
annotypos	the starting y-axis position of textual annotation
annotyinterval	the interval on y-axis for textual annotation
colorpanel	a vector of customizable color scheme provided by the user
plotlegend	a legend object from ms_melt_legend
commonlegend	whether to use one common legend for whole page of plots
toplabel	textual label at the top of the page
leftlabel	textual label at the left side of the page
bottomlabel	textual label at the bottom of the page
withset	whether there is set column to perform facet_grid
layout	a vector indicating the panel layout for multi-panel plots per page

Value

a list of ggplot2 object

nkdailingyun/mineCETSA documentation built on Feb. 27, 2021, 8:26 p.m.