ms_isothermal_scaling: ms_isothermal_scaling

In nkdailingyun/mineCETSA: Processing and Visualization of Proteome-wide MS-CETSA data

Description

Internal function to apply systematic scaling to the ITDR or ITTR dataset

Usage

ms_isothermal_scaling(
  data,
  dataname,
  nread,
  abdnorm,
  reftolowest,
  remloadc,
  loadcname,
  numcharmix,
  writefactortofile,
  bottomlabel,
  filename
)

Arguments

data	dataset to be scaled
nread	number of reading channels or sample treatements
abdnorm	whether to apply protein abundance level normalization
reftolowest	whether to check and re-arrange the treatment dose (or time) in ascending order, using the readings from lowest dose (or time) group as the reference to derive ratios
remloadc	whether to remove loading control sample
loadcname	the header name of loading control sample
numcharmix	whether the treatment names contains both character and numeric values
writefactortofile	whether to save a copy of scaling factors
bottomlabel	textual label at the bottom of the plot
filename	name for the file

Value

a dataframe

nkdailingyun/mineCETSA documentation built on Feb. 27, 2021, 8:26 p.m.