API for nlhuong/TimeSeriesExperiment
Analysis for short time-series data
| Global functions | |
|---|---|
| %>% | Man page |
| .TimeSeriesExperiment | Man page |
| .addLagsToTimeSeries | Man page Source code |
| .imputeData | Man page Source code |
| .processSE | Source code |
| .replaceNames | Source code |
| .resetResults | Source code |
| .setAssayCollapsed | Source code |
| .setColDataCollapsed | Source code |
| .setGroup | Source code |
| .setReplicate | Source code |
| .setTime | Source code |
| .setTimeSeries | Source code |
| .valid.TimeSeriesExperiment | Source code |
| TimeSeriesExperiment | Man page Source code |
| TimeSeriesExperiment-class | Man page |
| TimeSeriesExperiment-constructor | Man page |
| addLags | Man page Source code |
| assayCollapsed | Man page |
| assayCollapsed,TimeSeriesExperiment-method | Man page |
| assayCollapsed<- | Man page |
| assayCollapsed<-,TimeSeriesExperiment-method | Man page |
| assignClusterDynamic | Man page Source code |
| assignClusterStatic | Man page Source code |
| clusterAssignment | Man page |
| clusterAssignment,TimeSeriesExperiment-method | Man page |
| clusterData | Man page Source code |
| clusterMap | Man page |
| clusterMap,TimeSeriesExperiment-method | Man page |
| clusterTimeSeries | Man page Source code |
| colData<-,TimeSeriesExperiment,ANY-method | Man page |
| colDataCollapsed | Man page |
| colDataCollapsed,TimeSeriesExperiment-method | Man page |
| colDataCollapsed<- | Man page |
| colDataCollapsed<-,TimeSeriesExperiment-method | Man page |
| collapseReplicates | Man page Source code |
| colnames<-,TimeSeriesExperiment-method | Man page |
| dataToTimeSeries | Man page Source code |
| differentialExpression | Man page |
| differentialExpression,TimeSeriesExperiment-method | Man page |
| dimensionReduction | Man page |
| dimensionReduction,TimeSeriesExperiment-method | Man page |
| endoderm_small | Man page |
| filterFeatures | Man page |
| groups | Man page |
| groups,TimeSeriesExperiment-method | Man page |
| groups<- | Man page |
| groups<-,TimeSeriesExperiment-method | Man page |
| makeTimeSeries | Man page Source code |
| makeTimeSeriesExperimentFromExpressionSet | Man page Source code |
| makeTimeSeriesExperimentFromSummarizedExperiment | Man page Source code |
| meltMatrix | Man page Source code |
| normalizeData | Man page Source code |
| pathwayEnrichment | Man page Source code |
| plotEnrichment | Man page Source code |
| plotHeatmap | Man page Source code |
| plotSamplePCA | Man page Source code |
| plotTimeSeries | Man page Source code |
| plotTimeSeriesClusters | Man page Source code |
| plotTimeSeriesPCA | Man page Source code |
| replicates | Man page |
| replicates,TimeSeriesExperiment-method | Man page |
| replicates<- | Man page |
| replicates<-,TimeSeriesExperiment-method | Man page |
| rowData<-,TimeSeriesExperiment-method | Man page |
| rownames<-,TimeSeriesExperiment-method | Man page |
| runPCA | Man page Source code |
| show,TimeSeriesExperiment-method | Man page |
| timeSeries | Man page |
| timeSeries,TimeSeriesExperiment-method | Man page |
| timeSeries<- | Man page |
| timeSeries<-,TimeSeriesExperiment-method | Man page |
| timepointDE | Man page Source code |
| timepoints | Man page |
| timepoints,TimeSeriesExperiment-method | Man page |
| timepoints<- | Man page |
| timepoints<-,TimeSeriesExperiment-method | Man page |
| trajectoryDE | Man page Source code |
| varianceStabilization | Man page Source code |
