plotTimeSeries: Plot selected time series.

In nlhuong/TimeSeriesExperiment: Analysis for short time-series data

Description

Plotting expression over time for selected genes curve and colors correspond to distinct groups.

Usage

plotTimeSeries(
  object,
  features = rownames(object),
  trans = FALSE,
  smooth = TRUE,
  ncol = 5,
  scales = "free"
)

Arguments

object	A TimeSeriesExperiment object.
features	A vector of names of selected features to plot.
trans	A boolean indicating whether (TRUE) transformed, variance stabilized, assay values should be printed or (FALSE) just normalized by sample depth.
smooth	If TRUE a smoothed line is plotted for each gene and each group, else a piecewise linear average (over replicates) curve is plotted.
ncol	An integer indicating the number of columns for facetting. Default is 5.
scales	character scalar indecating facet scales, by default "free".

Value

list of ggplot objects

Examples

data("endoderm_small")
feat_to_plot <- rownames(endoderm_small)[1:10]
plotTimeSeries(endoderm_small, features = feat_to_plot, smooth = FALSE)

nlhuong/TimeSeriesExperiment documentation built on Sept. 8, 2021, 12:30 a.m.