Files in nlhuong/TimeSeriesExperiment
Analysis for short time-series data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/TimeSeriesExperiment-class.R
R/TimeSeriesExperiment-methods.R
R/clustering.R
R/data.R
R/differential_expression.R
R/pathway_over_representation.R
R/pca.R
R/plots.R
R/utils.R
README.md
data/endoderm_small.rda
inst/data-raw/endoderm.R
man/TimeSeriesExperiment.Rd
man/addLags.Rd
man/assignClusterDynamic.Rd
man/assignClusterStatic.Rd
man/clusterAssignment.Rd
man/clusterData.Rd
man/clusterTimeSeries.Rd
man/colData.Rd
man/collapseReplicates.Rd
man/collapsed-data.Rd
man/dataToTimeSeries.Rd
man/differentialExpression.Rd
man/dimensionReduction.Rd
man/dot-addLagsToTimeSeries.Rd
man/dot-imputeData.Rd
man/endoderm_small.Rd
man/filterFeatures.Rd
man/groups.Rd
man/makeTimeSeries.Rd
man/makeTimeSeriesExperimentFromExpressionSet.Rd
man/makeTimeSeriesExperimentFromSummarizedExperiment.Rd
man/meltMatrix.Rd
man/normalizeData.Rd
man/pathwayEnrichment.Rd
man/pipe.Rd
man/plotEnrichment.Rd
man/plotHeatmap.Rd
man/plotSamplePCA.Rd
man/plotTimeSeries.Rd
man/plotTimeSeriesClusters.Rd
man/plotTimeSeriesPCA.Rd
man/replicates.Rd
man/rowData.Rd
man/row_and_colnames.Rd
man/runPCA.Rd
man/show-methods.Rd
man/timeSeries.Rd
man/timepointDE.Rd
man/timepoints.Rd
man/trajectoryDE.Rd
man/varianceStabilization.Rd
vignettes/cop1_knockout_timecourse.Rmd
vignettes/de_trajectory_cop1.rds
vignettes/enrich_res_cop1.rds
