normalizeData: Normalize Data

In nlhuong/TimeSeriesExperiment: Analysis for short time-series data

Description

Normalize data the assay data.

Usage

normalizeData(
  object,
  sample.norm.method = "scale_common_factor",
  column.scale.factor = 1e+06
)

Arguments

object	A TimeSeriesExperiment object or a data matrix/data frame.
sample.norm.method	Method for sample normalization. Currently supports only scaling to a common factor, "scale_common_factor" which with column.scale.factor = 1e+06 is equivalent to CPM normalization.
column.scale.factor	Sets the scale factor for sample-level normalization

Value

Returns TimeSeriesExperiment object after normalization. Normalized data is stored data slot.

Examples

data("endoderm_small")
names(assays(endoderm_small))
endoderm_small <- normalizeData(endoderm_small)
assays(endoderm_small)$norm[1:10, 1:6]

nlhuong/TimeSeriesExperiment documentation built on Sept. 8, 2021, 12:30 a.m.