Man pages for nlhuong/TimeSeriesExperiment
Analysis for short time-series data

addLags	Add differences to the time-course data.
assignClusterDynamic	Cluster assignment using dynamic branch cutting.
assignClusterStatic	Cluster assignment using static branch cutting.
clusterAssignment	Cluster analysis results
clusterData	Cluster time series data.
clusterTimeSeries	Cluster time series features.
colData	Column data for 'TimeSeriesExperiment'
collapsed-data	Collapsed data.
collapseReplicates	Collapse data over replicates.
dataToTimeSeries	Data to time-series
differentialExpression	Differential Expression for 'TimeSeriesExperiment'
dimensionReduction	Dimension reduction results
dot-addLagsToTimeSeries	Add differences to the time-course data.
dot-imputeData	Imputing missing samples
endoderm_small	Endoderm differentiation
filterFeatures	Filter features
groups	Group information
makeTimeSeries	Convert data to time-series
makeTimeSeriesExperimentFromExpressionSet	TimeSeriesExperiment constructor from ExpressionSet
makeTimeSeriesExperimentFromSummarizedExperiment	TimeSeriesExperiment constructor from SummarizedExperiment
meltMatrix	Melt data matrix.
normalizeData	Normalize Data
pathwayEnrichment	Pathway enrichment testing.
pipe	Pipe operator
plotEnrichment	Plot enrichment results.
plotHeatmap	Plot a heatmap
plotSamplePCA	Plot a standard PCA
plotTimeSeries	Plot selected time series.
plotTimeSeriesClusters	Plot (time) series over clusters.
plotTimeSeriesPCA	Overlay (time) series over PCA grid
replicates	Replicate information
row_and_colnames	Row and column name getters and setters for...
rowData	Row data for 'TimeSeriesExperiment'
runPCA	Run PCA scores.
show-methods	show method for 'TimeSeriesExperiment'
timepointDE	Differential timepoint expression testing.
timepoints	Timepoint information
timeSeries	Time series formatted data.
TimeSeriesExperiment	Time Series Experiment Class
trajectoryDE	Differential trajectory testing.
varianceStabilization	Variance stabilization.