Man pages for npcooley/Heron
A Package of Various Genomics Tools
| Catalog | A function for doing simple network analysis on sets of... |
| CoreAligner | A function for aligning core genomes. |
| EdgeMatrix | A Function for creating a matrix of 'edges' or predicted... |
| ExactSelect | Model for identifying erroneously linked pairs |
| ExtractCDSs | Extract coding regions of a gene. |
| GetOrthologSummary | Summarize statistics about ortholog predictions. |
| gffToDataFrame | Generate a DataFrame of gene calls from a gff3 file |
| GlobalSelect | Model for identifying erroneously linked pairs |
| HSSPScore | A function for determining the HSSP score for a given... |
| LocalSelect | Model for identifying erroneously linked pairs |
| NCBIGFFParser | A function for parsing genomic General Format Files directly... |
| NucleotideOverlap | Tabulating Pairs of Genomic Sequences |
| PairSummaries | Summarize connected pairs in a LinkedPairs object |
| ParseSubGraphs | A function for parsing subgraphs of a large adjacency graph. |
| ReadMCL | Read an MCL output file into R. |
| ReciprocalBestBlast | A generic reciprocal best blast search. |
| ResolveConflicts | A function for removing conflicting ortholog predictions |
| SubCatalog | A function for doing simple network analysis on sets of... |
