ParseSubGraphs: A function for parsing subgraphs of a large adjacency graph.

In npcooley/Heron: A Package of Various Genomics Tools

Description

Collect alignments, distance matrices, dendrograms, and phylograms for subgraphs of genes

Usage

ParseSubGraphs(Groups, DBPATH, GeneCalls, IgnoreDefault = FALSE, Verbose = TRUE)

Arguments

Groups	A list of either subgraphs from a large adjacency graph, or character vectors identifying positions on an adjacency graph.
DBPATH	A character vector specifying a sqlite database built by DECIPHER.
GeneCalls	A named list of dataframes providing columns named Start, Stop, Index, and Strand.
IgnoreDefault	Logical, if TRUE all alignments will be DNA Alignments.
Verbose	Print progress bars to screen

Examples

ParseSubGraphs()

npcooley/Heron documentation built on April 4, 2020, 10:24 p.m.