ExtractCDSs: Extract coding regions of a gene.

In npcooley/Heron: A Package of Various Genomics Tools

Description

Allow extraction of individual genes into a DNAStringSet.

Usage

ExtractCDSs(Match, Start, Stop, Strand = 0L, SourceString, Mode = "Character")

Arguments

Match	A character string of the format ..X..Y..X.. where X indicates a gap between starts and stops and Y indicates a gap between Starts and Starts.
Start	Gene Start if breaks are given for the coding sequence.
Stop	Gene Stop if no breaks are given for the coding sequence.
Strand	Strand of the coding sequence.
SourceString	DNAString from which to pull the gene.
Mode	Argument for future use to allow multi-exon genes to be extracted in other formats.

Examples

ExtractCDSs()

npcooley/Heron documentation built on April 4, 2020, 10:24 p.m.