CoreAligner: A function for aligning core genomes.
In npcooley/Heron: A Package of Various Genomics Tools
Description
Usage
Arguments
Examples
Description
Core Aligner is a wrapper for ‘DECIPHER'’s 'AlignTranslation' function. Given a subset of the output of 'Catalog' or 'SubCatalog', it will align genes from the complete linkage clusters and then concatenate those alignments.
Usage
1
CoreAligner(ListOfSets, PATH, GeneCalls, IDs, Verbose = FALSE)
Arguments
ListOfSets
A list of matrices
PATH
A character string identifying a sqlite database
GeneCalls
A list of dataframes, one for each genome, with named columns "Start", "Stop", and "Strand"
IDs
A vector of characters indicating the identifiers for which genomes to select
Examples
1
npcooley/Heron documentation built on April 4, 2020, 10:24 p.m.
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Description Usage Arguments Examples
Description
Core Aligner is a wrapper for ‘DECIPHER'’s 'AlignTranslation' function. Given a subset of the output of 'Catalog' or 'SubCatalog', it will align genes from the complete linkage clusters and then concatenate those alignments.
Usage
1 | CoreAligner(ListOfSets, PATH, GeneCalls, IDs, Verbose = FALSE)
|
Arguments
ListOfSets |
A list of matrices |
PATH |
A character string identifying a sqlite database |
GeneCalls |
A list of dataframes, one for each genome, with named columns "Start", "Stop", and "Strand" |
IDs |
A vector of characters indicating the identifiers for which genomes to select |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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