GetOrthologSummary: Summarize statistics about ortholog predictions.
In npcooley/Heron: A Package of Various Genomics Tools
Description
Usage
Arguments
Examples
View source: R/GetOrthologSummary.R
Description
Summarize statistics about ortholog predictions.
Usage
1
2
GetOrthologSummary(OrthologsObject, GeneCalls, DBPath,
SimilarityScores = FALSE, Verbose = FALSE)
Arguments
OrthologsObject
An object of class "Orthologs"
GeneCalls
A list of dataframes, one for each genome in SyntenyObject, with named columns "Index", "Start", "Stop", "Strand", and an optional "Annotation" column.
DBPath
A character vector specifying a sqlite database built by DECIPHER
SimilarityScores
A logical indicating whether to get the global alignment scores for all predicted orthologs
Verbose
Run with progress bar, return total upon completion.
Examples
1
npcooley/Heron documentation built on April 4, 2020, 10:24 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
View source: R/GetOrthologSummary.R
Description
Summarize statistics about ortholog predictions.
Usage
1 2 | GetOrthologSummary(OrthologsObject, GeneCalls, DBPath,
SimilarityScores = FALSE, Verbose = FALSE)
|
Arguments
OrthologsObject |
An object of class "Orthologs" |
GeneCalls |
A list of dataframes, one for each genome in SyntenyObject, with named columns "Index", "Start", "Stop", "Strand", and an optional "Annotation" column. |
DBPath |
A character vector specifying a sqlite database built by DECIPHER |
SimilarityScores |
A logical indicating whether to get the global alignment scores for all predicted orthologs |
Verbose |
Run with progress bar, return total upon completion. |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.