SubCatalog: A function for doing simple network analysis on sets of...
In npcooley/Heron: A Package of Various Genomics Tools
Description
Usage
Arguments
Examples
Description
The function 'Catalog' is not parallelizable, this is a parallelizable version 'Catalog', but requires an EdgeMatrix instead of an Orthology Object. Lists of these subcatalogs can then be stitched together.
Usage
1
SubCatalog(EdgeMatrix, SubDivision, Verbose = FALSE)
Arguments
EdgeMatrix
A matrix of predicted orthologs, with each row being an "edge" consisting of two nodes, each being genes in a predicted orthologous pair. The nodes are located in a column that specifies a genome.
SubDivision
Selected rows to build an edge network for
Examples
1
npcooley/Heron documentation built on April 4, 2020, 10:24 p.m.
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Description Usage Arguments Examples
Description
The function 'Catalog' is not parallelizable, this is a parallelizable version 'Catalog', but requires an EdgeMatrix instead of an Orthology Object. Lists of these subcatalogs can then be stitched together.
Usage
1 | SubCatalog(EdgeMatrix, SubDivision, Verbose = FALSE)
|
Arguments
EdgeMatrix |
A matrix of predicted orthologs, with each row being an "edge" consisting of two nodes, each being genes in a predicted orthologous pair. The nodes are located in a column that specifies a genome. |
SubDivision |
Selected rows to build an edge network for |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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