loadRegionDB: Helper function to annotate and load a regionDB, a folder...
In nsheff/LOLA: Locus overlap analysis for enrichment of genomic ranges
Description
Usage
Arguments
Value
Examples
Description
Helper function to annotate and load a regionDB, a folder with
subfolder collections of regions.
Usage
1
loadRegionDB(dbLocation, useCache = TRUE, limit = NULL, collections = NULL)
Arguments
dbLocation
folder where your regionDB is stored, or list of such folders
useCache
uses simpleCache to cache and load the results
limit
You can limit the number of regions for testing.
Default: NULL (no limit)
collections
Restrict the database loading to this list of collections
Value
regionDB list containing database location, region and
collection annotations, and regions GRangesList
Examples
1
2
dbPath = system.file("extdata", "hg19", package="LOLA")
regionDB = loadRegionDB(dbLocation=dbPath)
nsheff/LOLA documentation built on Sept. 8, 2020, 11:50 a.m.
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Description Usage Arguments Value Examples
Description
Helper function to annotate and load a regionDB, a folder with subfolder collections of regions.
Usage
1 | loadRegionDB(dbLocation, useCache = TRUE, limit = NULL, collections = NULL)
|
Arguments
dbLocation |
folder where your regionDB is stored, or list of such folders |
useCache |
uses simpleCache to cache and load the results |
limit |
You can limit the number of regions for testing. Default: NULL (no limit) |
collections |
Restrict the database loading to this list of collections |
Value
regionDB list containing database location, region and collection annotations, and regions GRangesList
Examples
1 2 | dbPath = system.file("extdata", "hg19", package="LOLA")
regionDB = loadRegionDB(dbLocation=dbPath)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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