alignAnalyze: This will be THE function for alignment-analysis output

In oacar/synal: Synteny Alignment and Analysis for Saccharomyces sensu stricto

Description

This will be THE function for alignment-analysis output

Usage

alignAnalyze(filename, orfName, annotated = T, outputDirectory = NULL,
  specNames, ...)

Arguments

filename	alignment file name or directory name
orfName	identifier for ORF. SGD name if annotated
annotated	boolean shows if the given sequence is annotated or not
outputDirectory	directory to save alignment output
specNames	species names given by user provided tree. it is needed for correct output names and analysis
...	placeholder for sequence file names

Value

save data into csv and return dataframe

oacar/synal documentation built on Feb. 22, 2020, 1:42 p.m.