readFiles: Read syntetic block sequence files
In oacar/synal: Synteny Alignment and Analysis for Saccharomyces sensu stricto
Description
Usage
Arguments
Value
Description
Read syntetic block sequence files
Usage
1
readFiles(path, specNames)
Arguments
path
folder path that has sequence fasta files in it
specNames
species names to look for
every sequence file needs to contain its species name . (i.e. S. Cerevisiae file should contain 'scer')
also assumes there is only 1 file for every species
Value
DNAStringSet object with the sequences in it
order of DNAStringSet will be order of specNames
TODO check for multiple files having the search string in them
oacar/synal documentation built on Feb. 22, 2020, 1:42 p.m.
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Description Usage Arguments Value
Description
Read syntetic block sequence files
Usage
1 | readFiles(path, specNames)
|
Arguments
path |
folder path that has sequence fasta files in it |
specNames |
species names to look for every sequence file needs to contain its species name . (i.e. S. Cerevisiae file should contain 'scer') also assumes there is only 1 file for every species |
Value
DNAStringSet object with the sequences in it order of DNAStringSet will be order of specNames
TODO check for multiple files having the search string in them
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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