subalignment: Export subalingment of the region between start and stop Scer...
In oacar/synal: Synteny Alignment and Analysis for Saccharomyces sensu stricto
Description
Usage
Arguments
Value
Description
Export subalingment of the region between start and stop Scer orf
Usage
1
subalignment(start, stop, DNAStr)
Arguments
start
the start position of proto-gene on the DNAStr object
stop
the stop position of the proto-gene on the DNAStr object (the position of last nucleotide of the ORF)
DNAStr
aligned DNAStringSet object
Value
list of the subalignment as DNAStringSet object between the positions (start,stop) and identity percentage w.r.t. first sequence (SCER)
oacar/synal documentation built on Feb. 22, 2020, 1:42 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Export subalingment of the region between start and stop Scer orf
Usage
1 | subalignment(start, stop, DNAStr)
|
Arguments
start |
the start position of proto-gene on the DNAStr object |
stop |
the stop position of the proto-gene on the DNAStr object (the position of last nucleotide of the ORF) |
DNAStr |
aligned DNAStringSet object |
Value
list of the subalignment as DNAStringSet object between the positions (start,stop) and identity percentage w.r.t. first sequence (SCER)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.