calcIdentity: Calculate Only Gaps are treated as difference if one sequence...
In oacar/synal: Synteny Alignment and Analysis for Saccharomyces sensu stricto
Description
Usage
Arguments
Value
Description
Calculate
Only
Gaps are treated as difference if one sequence has gap and other does not. If both sequence have gap in the same position it will not be count as similarity
Usage
1
calcIdentity(alignment, percent = T)
Arguments
alignment
DNAStringSet or AAStringSet object of alignments
percent
boolean for calculating percent ID or number of identical columns
Value
nx1 matrix with with
oacar/synal documentation built on Feb. 22, 2020, 1:42 p.m.
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Description Usage Arguments Value
Description
Calculate Only Gaps are treated as difference if one sequence has gap and other does not. If both sequence have gap in the same position it will not be count as similarity
Usage
1 | calcIdentity(alignment, percent = T)
|
Arguments
alignment |
DNAStringSet or AAStringSet object of alignments |
percent |
boolean for calculating percent ID or number of identical columns |
Value
nx1 matrix with with
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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