macseAdjustment: Correct macse Changes some macse spesific characters for the...
In oacar/synal: Synteny Alignment and Analysis for Saccharomyces sensu stricto
Description
Usage
Arguments
Value
View source: R/macseAdjustment.R
Description
Correct macse
Changes some macse spesific characters for the general purposes of this package
since macse reorder the sequences after alignment, I use previously used alignment file to change the order back to scer,spar,smik,skud,sbay
changes '!' character to '-' and '*' to 'X'
Usage
1
macseAdjustment(macseAlignment, seqSet)
Arguments
macseAlignment
macse aligned AAStringSet object
seqSet
previously used DNAStringSet or AAStringSet object of the same sequences
Value
corrected AAStringSet object
oacar/synal documentation built on Feb. 22, 2020, 1:42 p.m.
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Description Usage Arguments Value
View source: R/macseAdjustment.R
Description
Correct macse Changes some macse spesific characters for the general purposes of this package since macse reorder the sequences after alignment, I use previously used alignment file to change the order back to scer,spar,smik,skud,sbay changes '!' character to '-' and '*' to 'X'
Usage
1 | macseAdjustment(macseAlignment, seqSet)
|
Arguments
macseAlignment |
macse aligned AAStringSet object |
seqSet |
previously used DNAStringSet or AAStringSet object of the same sequences |
Value
corrected AAStringSet object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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