LoadTiff: Import Image from TIFF

In ocbe-uio/CellMigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

Import a .tif stack containing fluorescently labeled point particles to be tracked

Usage

LoadTiff(tiff_file, experiment = NULL, condition = NULL, replicate = NULL)

Arguments

tiff_file	path to a TIFF file to be read in
experiment	string, a label to describe the experiment (optional)
condition	string, a label to describe the experimental condition
replicate	string, a label to identify the replicate (optional)

Value

a trackedCells object

Note

'experiment', 'condition' and 'replicate' are optional arguments and can be NULL.

Author(s)

Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/ https://www.mathworks.com/matlabcentral/fileexchange/60349-fasttracks

Examples

# Let `path/to/tiff_file.tiff` be the path to tiff file we want to
# import. If an error is thrown, NULL is returned.
x <- LoadTiff(tiff_file = "path/to/tiff_file.tiff")

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.