plot3DAllTracks: A 3D rose-plot of all cells

Description Usage Arguments Details Value Note Author(s) References Examples

View source: R/all_functions_v8.R

Description

Plotting the trajectory data of all cells in 3D.

Usage

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plot3DAllTracks(object, VS = 3, size = 2, interactive = TRUE)

Arguments

object

CellMig class object, which is a list of data frames resulted from the PreProcessing.

VS

A numeric value of the vertical separator between cells.

size

A numeric value of the point's size.

interactive

logical, shall the 3D plot be generated in a interactive fashion

Details

The 3D visualization shows centered trajectories where the starting point of each track is located at the origin of the coordinate system (X=0,Y=0).

Value

A 3D rose-plot showing the tracks of all cells.

Note

This function requires the rgl package to be installed on your system.

Author(s)

Salim Ghannoum salim.ghannoum@medisin.uio.no

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

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if (Sys.info()[["sysname"]] != "Darwin") {
  # interactive shall be set to TRUE (default)
  rmTD <- get(data(preProcCellMig))
  plot3DAllTracks(rmTD, VS=3, size=2, interactive = FALSE)
}

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.