rmPreProcessing: Data preprocessing for random migration (RM)

Description Usage Arguments Value Author(s) References Examples

View source: R/all_functions_v8.R

Description

This function allows preprocessing of the trajectory data from random migration (RM) experiments.

Usage

1
2
3
4
5
6
7
rmPreProcessing(
  object,
  PixelSize = 1.24,
  TimeInterval = 10,
  FrameN = NULL,
  ExpName = NULL
)

Arguments

object

CellMig class object.

PixelSize

A numeric value of the physical size of a pixel. Default is 1.24.

TimeInterval

A numeric value of the time elapsed between successive frames in the time-lapse stack. Default is 10 min.

FrameN

A numeric value of the number of frames. Default is NULL

ExpName

string, name of the experiment. Can be NULL

Value

An CellMig class object with preprocessed data.

Author(s)

Salim Ghannoum salim.ghannoum@medisin.uio.no

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

1
2
3
4
TrajectoryDataset <- get(data(TrajectoryDataset))
rmDF=TrajectoryDataset[seq(1,40,by=1),]
rmTD <- CellMig(rmDF)
rmTD <- rmPreProcessing(rmTD, FrameN=30)

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.