trackedCells-class: The trackedCells Class.

Description Usage Arguments Value Slots Author(s)

Description

An S4 class to represent a set of cells whose movements were tracked over time.

Usage

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## S4 method for signature 'trackedCells'
initialize(.Object, x)

Arguments

.Object

the trackedCells object being built

x

imported TIFF image data

Value

An S4-class object

a trackedCells object

Slots

images

is a list of imported images

proc_images

is a list of processed images

ops

is a list keeping track of the operations executed on the object

optimized

is a list including results of the params auto-optimization (optional)

centroids

is a list of detected centroids

positions

is a data.frame of cell positions across stacks

tracks

is a numeric matrix of cell tracks

params

is a list of parameters used for the analysis

stats

is a list of stats computed for the cell tracks

metadata

is a list including labels about the image, and the experiment

Author(s)

Damiano Fantini damiano.fantini@gmail.com


ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.